Computational Structural & Systems Biology
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- DIIP: Domain-based Isoform Interactome Prediction (Ghadie et al., PLoS Comput. Biol. 13: e1005717, 2017).
- Local Community Finder (Command Line) (Voevodski et al., BMC Bioinformatics 10: 297, 2009).
- Local Protein Community Finder (Voevodski et al., BMC Bioinformatics 10: 297, 2009).
- Protein Network Neighbor Search (Voevodski et al., BMC Syst. Biol. 3: 112, 2009).
- SPEED: Signaling Pathway Enrichment using Experimental Datasets (Parikh et al., Nucleic Acids Res., 38: W109-W117, 2010).
- MetaNet (Parikh et al., PLoS ONE 7: e45211, 2012).
- EPSLiM: Ensemble Predictor for Short Linear Motifs (Xue et al., Mol. Endocrinol. 28: 768-777, 2014).
- PocilloporaBase: Reference transcriptomic database for Pocillopora damicornis (Traylor-Knowles et al., BMC Genomics 12: 585, 2011)
Yu (Brandon) Xia Lab | Department of Bioengineering | McGill University